Transcript: lnc-MDGA1-1:1

Basic information

LNCipedia transcript ID: lnc-MDGA1-1:1 
LNCipedia gene ID: lnc-MDGA1-1
Ensembl Gene ID: ENSG00000225945
Ensembl Transcript ID: ENST00000415890
Location (hg38): chr6:37815777-37819218
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 419 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415890.1; RP3-441A12.1-001; OTTHUMT00000040422.1; NONHSAT112285
Alternative gene names: ENSG00000225945.1; RP3-441A12.1; OTTHUMG00000014627.1; AL121574.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -312.8939 non-coding 
CPAT coding probability 14.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MDGA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MDGA1-1:1
4.0 lnc-MDGA1-1:1
4.1 lnc-MDGA1-1:1
5.0 lnc-MDGA1-1:1
5.1 lnc-CPNE5-29:4
5.2 lnc-MDGA1-1:1