Transcript: lnc-MDM4-1:1

Basic information

LNCipedia transcript ID: lnc-MDM4-1:1 
LNCipedia gene ID: lnc-MDM4-1
Ensembl Gene ID: ENSG00000240710
Ensembl Transcript ID: ENST00000453895
Location (hg38): chr1:204603035-204616565
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453895.1; RP11-430C7.4-001; OTTHUMT00000089906.1; NONHSAT008958
Alternative gene names: ENSG00000240710.1; RP11-430C7.4; OTTHUMG00000037031.1; AL512306.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0747 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MDM4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MDM4-1:1
4.0 lnc-MDM4-1:1
4.1 lnc-MDM4-1:1
5.0 lnc-MDM4-1:1
5.1 lnc-CNTN2-14:1
5.2 lnc-MDM4-1:1