Transcript: lnc-MDM4-3:1

Basic information

LNCipedia transcript ID: lnc-MDM4-3:1 
LNCipedia gene ID: lnc-MDM4-3
Ensembl Gene ID: ENSG00000228153
Ensembl Transcript ID: ENST00000435021
Location (hg38): chr1:204663872-204664613
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 445 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435021; ENST00000435021.1; RP11-23I7.1-001; OTTHUMT00000089905.1; NONHSAT008968
Alternative gene names: ENSG00000228153; RP11-23I7.1; ENSG00000228153.1; OTTHUMG00000037030.1; AL161793.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -272.8272 non-coding 
CPAT coding probability 16.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MDM4-3:1 yes no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MDM4-2:1
3.1 lnc-MDM4-3:1
4.0 lnc-MDM4-3:1
4.1 lnc-MDM4-3:1
5.0 lnc-MDM4-3:1
5.1 lnc-CNTN2-11:3
5.2 lnc-MDM4-3:1