Transcript: lnc-MDM4-3:2

Basic information

LNCipedia transcript ID: lnc-MDM4-3:2 
LNCipedia gene ID: lnc-MDM4-3
Location (hg38): chr1:204659428-204664710
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1839 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT008966
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.0227 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MDM4-3:2 yes no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MDM4-3:2
4.0 lnc-MDM4-3:2
4.1 lnc-MDM4-3:2
5.0 lnc-MDM4-3:2
5.1 lnc-CNTN2-11:1
5.2 lnc-MDM4-3:2