Transcript: lnc-MED10-8:1

Basic information

LNCipedia transcript ID: lnc-MED10-8:1 
LNCipedia gene ID: lnc-MED10-8
Ensembl Gene ID: ENSG00000251426
Ensembl Transcript ID: ENST00000511514
Location (hg38): chr5:5046796-5049497
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009591; ENST00000511514; ENST00000511514.1; CTD-2247C11.4-001; OTTHUMT00000365649.2; NONHSAT100159
Alternative gene names: XLOC_004718; linc-IRX2-13; ENSG00000251426; CTD-2247C11.4; ENSG00000251426.1; OTTHUMG00000161659.2; AC010451.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.1904 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MED10-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MED10-5:1
3.1 lnc-MED10-8:1
4.0 lnc-MED10-8:1
4.1 lnc-MED10-8:1
5.0 lnc-MED10-8:1
5.1 lnc-IRX2-50:1
5.2 lnc-MED10-8:1