Transcript: lnc-MED10-9:2

Basic information

LNCipedia transcript ID: lnc-MED10-9:2 
LNCipedia gene ID: lnc-MED10-9
Location (hg38): chr5:5021558-5034224
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 256 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00010253
Alternative gene names: XLOC_004717; linc-IRX2-7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.6689 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MED10-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MED10-6:2
3.1 lnc-MED10-9:2
4.0 lnc-MED10-9:2
4.1 lnc-MED10-9:2
5.0 lnc-MED10-9:2
5.1 lnc-IRX2-49:3
5.2 lnc-MED10-9:2