Transcript: lnc-MEF2A-3:2

Basic information

LNCipedia transcript ID: lnc-MEF2A-3:2 
LNCipedia gene ID: lnc-MEF2A-3
Ensembl Gene ID: ENSG00000259356
Ensembl Transcript ID: ENST00000560128
Location (hg38): chr15:100126106-100129743
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1781 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560128.1; RP11-90E5.1-001; OTTHUMT00000417583.1; NONHSAT051083
Alternative gene names: ENSG00000259356.1; RP11-90E5.1; OTTHUMG00000172262.1; AC022710.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.988 non-coding 
CPAT coding probability 15.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEF2A-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2054N24.2.1-3:1
4.0 lnc-CTD-2054N24.2.1-3:1
4.1 lnc-CTD-2054N24.2.1-3:1
5.0 lnc-CTD-2054N24.2.1-3:1
5.1 lnc-OR4F15-21:1
5.2 lnc-MEF2A-3:2