Transcript: lnc-MEF2C-4:1

Basic information

LNCipedia transcript ID: lnc-MEF2C-4:1 
LNCipedia gene ID: lnc-MEF2C-4
Ensembl Gene ID: ENSG00000250831
Ensembl Transcript ID: ENST00000514662
Location (hg38): chr5:89466537-89470039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 253 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009721; ENST00000514662; ENST00000514662.1; CTD-2232E5.2-001; OTTHUMT00000370016.1; NONHSAT102715
Alternative gene names: XLOC_004920; linc-MEF2C-2; ENSG00000250831; CTD-2232E5.2; ENSG00000250831.1; OTTHUMG00000162670.1; AC074131.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.371 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEF2C-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEF2C-4:1
3.1 lnc-MEF2C-4:1
4.0 lnc-MEF2C-4:1
4.1 lnc-MEF2C-4:1
5.0 lnc-MEF2C-4:1
5.1 lnc-ANKRD34B-161:1
5.2 lnc-MEF2C-4:1