Transcript: lnc-MEIS2-5:2

Basic information

LNCipedia transcript ID: lnc-MEIS2-5:2 
LNCipedia gene ID: lnc-MEIS2-5
Ensembl Gene ID: ENSG00000259737
Ensembl Transcript ID: ENST00000558262
Location (hg38): chr15:36441618-36460449
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 298 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558262.1; RP11-475A13.1-003; OTTHUMT00000418045.1; NONHSAT041653; ENST00000558262.5
Alternative gene names: ENSG00000259737.2; RP11-475A13.1; OTTHUMG00000172358.2; ENSG00000259737.6; AC087516.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -324.192 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEIS2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MEIS2-5:2
4.0 lnc-MEIS2-5:2
4.1 lnc-MEIS2-5:2
5.0 lnc-MEIS2-5:2
5.1 lnc-NANOGP8-10:2
5.2 lnc-MEIS2-5:2