Transcript: lnc-MEIS2-5:3

Basic information

LNCipedia transcript ID: lnc-MEIS2-5:3 
LNCipedia gene ID: lnc-MEIS2-5
Ensembl Gene ID: ENSG00000259737
Ensembl Transcript ID: ENST00000558963
Location (hg38): chr15:36438972-36444512
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3042 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558963.2; RP11-475A13.1-002; OTTHUMT00000418044.2; NONHSAT041652
Alternative gene names: ENSG00000259737.2; RP11-475A13.1; OTTHUMG00000172358.2; ENSG00000259737.6; AC087516.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.3035 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEIS2-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MEIS2-5:3
4.0 lnc-MEIS2-5:3
4.1 lnc-MEIS2-5:3
5.0 lnc-MEIS2-5:3
5.1 lnc-NANOGP8-10:3
5.2 lnc-MEIS2-5:3