Transcript: lnc-METAP1-3:2

Basic information

LNCipedia transcript ID: lnc-METAP1-3:2 
LNCipedia gene ID: lnc-METAP1-3
Ensembl Gene ID: ENSG00000246090
Ensembl Transcript ID: ENST00000499178
Location (hg38): chr4:99088951-99102793
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499178; ENST00000499178.2; RP11-696N14.1-002; OTTHUMT00000364249.1
Alternative gene names: ENSG00000246090; RP11-696N14.1; ENSG00000246090.2; OTTHUMG00000161232.2; ENSG00000246090.6; AP002026.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.1276 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-METAP1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-METAP1-2:2
3.1 lnc-METAP1-3:2
4.0 lnc-METAP1-3:2
4.1 lnc-METAP1-3:2
5.0 lnc-METAP1-3:2
5.1 lnc-C4orf17-50:4
5.2 lnc-METAP1-3:2