Transcript: lnc-METRNL-10:3

Basic information

LNCipedia transcript ID: lnc-METRNL-10:3 
LNCipedia gene ID: lnc-METRNL-10
Ensembl Gene ID: ENSG00000262952
Ensembl Transcript ID: ENST00000574856
Location (hg38): chr17:83220426-83221190
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 439 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574856.1; AC139099.6-001; OTTHUMT00000438912.1; NONHSAT056783
Alternative gene names: ENSG00000262952.1; AC139099.6; OTTHUMG00000177775.1; AC139099.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.4917 non-coding 
CPAT coding probability 6.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-METRNL-10:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC139099.1-2:2
4.0 lnc-AC139099.1-2:2
4.1 lnc-AC139099.1-2:2
5.0 lnc-AC139099.1-2:2
5.1 lnc-TSPAN10-106:3
5.2 lnc-METRNL-10:3