Transcript: lnc-METTL22-2:3

Basic information

LNCipedia transcript ID: lnc-METTL22-2:3 
LNCipedia gene ID: lnc-METTL22-2
Ensembl Gene ID: ENSG00000260058
Ensembl Transcript ID: ENST00000564185
Location (hg38): chr16:8309962-8357860
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 481 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564185.1; RP11-279O17.3-001; OTTHUMT00000433119.1; NONHSAT140388
Alternative gene names: ENSG00000260058.1; RP11-279O17.3; OTTHUMG00000176685.1; AC018767.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.4431 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-METTL22-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-METTL22-2:3
4.0 lnc-METTL22-2:3
4.1 lnc-METTL22-2:3
5.0 lnc-METTL22-2:3
5.1 lnc-SMIM22-37:4
5.2 lnc-METTL22-2:3