Transcript: lnc-METTL25-1:2

Basic information

LNCipedia transcript ID: lnc-METTL25-1:2 
LNCipedia gene ID: lnc-METTL25-1
Ensembl Gene ID: ENSG00000257431
Ensembl Transcript ID: ENST00000548575
Location (hg38): chr12:82512677-82515817
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3141 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548575; ENST00000548575.1; RP11-263K4.3-001; OTTHUMT00000408205.1; NONHSAT029724
Alternative gene names: ENSG00000257431; RP11-263K4.3; ENSG00000257431.1; OTTHUMG00000170255.1; AC089998.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4989 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-METTL25-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C12orf26-1:1
3.1 lnc-C12orf26-1:1
4.0 lnc-C12orf26-1:1
4.1 lnc-C12orf26-1:1
5.0 lnc-C12orf26-1:1
5.1 lnc-METTL25-1:1
5.2 lnc-METTL25-1:2