Transcript: lnc-MFAP2-5:1

Basic information

LNCipedia transcript ID: lnc-MFAP2-5:1 
LNCipedia gene ID: lnc-MFAP2-5
Ensembl Gene ID: ENSG00000223643
Ensembl Transcript ID: ENST00000422345
Location (hg38): chr1:16851321-16853129
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 735 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422345; ENST00000422345.1; RP11-108M9.1-001; OTTHUMT00000006251.1; NONHSAT001208
Alternative gene names: ENSG00000223643; RP11-108M9.1; ENSG00000223643.1; OTTHUMG00000002201.2; ENSG00000223643.2; ENSG00000223643.6; BX284668.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.2304 non-coding 
CPAT coding probability 2.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFAP2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BX284668.1-2:1
3.1 lnc-BX284668.1-2:1
4.0 lnc-BX284668.1-2:1
4.1 lnc-BX284668.1-2:1
5.0 lnc-BX284668.1-2:1
5.1 lnc-LRRC38-52:1
5.2 lnc-MFAP2-5:1