Transcript: lnc-MFAP2-5:2

Basic information

LNCipedia transcript ID: lnc-MFAP2-5:2 
LNCipedia gene ID: lnc-MFAP2-5
Location (hg38): chr1:16851203-16852799
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 608 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000414340; ENST00000414340.1; RP11-108M9.1-002; OTTHUMT00000006252.2; NONHSAT001207
Alternative gene names: ENSG00000223643; RP11-108M9.1; ENSG00000223643.1; OTTHUMG00000002201.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7238 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFAP2-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BX284668.1-2:2
3.1 lnc-BX284668.1-2:2
4.0 lnc-BX284668.1-2:2
4.1 lnc-BX284668.1-2:2
5.0 lnc-BX284668.1-2:2
5.1 lnc-LRRC38-52:2
5.2 lnc-MFAP2-5:2