Transcript: lnc-MFAP2-5:3

Basic information

LNCipedia transcript ID: lnc-MFAP2-5:3 
LNCipedia gene ID: lnc-MFAP2-5
Ensembl Gene ID: ENSG00000223643
Ensembl Transcript ID: ENST00000414340
Location (hg38): chr1:16851257-16852799
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414340.2; ENST00000414340.6
Alternative gene names: ENSG00000223643.2; RP11-108M9.1; ENSG00000223643.6; BX284668.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7238 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFAP2-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BX284668.1-2:3
4.0 lnc-BX284668.1-2:3
4.1 lnc-BX284668.1-2:3
5.0 lnc-BX284668.1-2:3
5.1 lnc-LRRC38-52:3
5.2 lnc-MFAP2-5:3