Transcript: lnc-MFHAS1-1:2

Basic information

LNCipedia transcript ID: lnc-MFHAS1-1:2 
LNCipedia gene ID: lnc-MFHAS1-1
Ensembl Gene ID: ENSG00000254367
Ensembl Transcript ID: ENST00000519147
Location (hg38): chr8:8751374-8781435
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 400 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519147; ENST00000519147.1; RP11-211C9.1-002; OTTHUMT00000374723.1; NONHSAT124888
Alternative gene names: ENSG00000254367; RP11-211C9.1; ENSG00000254367.1; OTTHUMG00000163675.1; ENSG00000254367.5; AC087269.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.8294 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFHAS1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFHAS1-1:2
3.1 lnc-MFHAS1-1:2
4.0 lnc-MFHAS1-1:2
4.1 lnc-MFHAS1-1:2
5.0 lnc-MFHAS1-1:2
5.1 lnc-DEFA1B-51:2
5.2 lnc-MFHAS1-1:2