Transcript: lnc-MFSD4B-1:3

Basic information

LNCipedia transcript ID: lnc-MFSD4B-1:3 
LNCipedia gene ID: lnc-MFSD4B-1
Ensembl Gene ID: ENSG00000230177
Ensembl Transcript ID: ENST00000444259
Location (hg38): chr6:111277932-111278742
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011355; ENST00000444259.1; RP5-1112D6.4-001; OTTHUMT00000041829.1; NONHSAT114453
Alternative gene names: XLOC_005426; linc-WISP3-3; ENSG00000230177.1; RP5-1112D6.4; OTTHUMG00000015374.1; AL080317.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7032 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFSD4B-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1919-1:2
3.1 lnc-KIAA1919-1:2
4.0 lnc-KIAA1919-1:2
4.1 lnc-KIAA1919-1:2
5.0 lnc-KIAA1919-1:2
5.1 lnc-SLC16A10-2:3
5.2 lnc-MFSD4B-1:3