Transcript: lnc-MGAT1-1:1

Basic information

LNCipedia transcript ID: lnc-MGAT1-1:1 
LNCipedia gene ID: lnc-MGAT1-1
Location (hg38): chr5:180784782-180787869
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3088 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000562870.1; CTC-205M6.5-001; OTTHUMT00000423203.1; NONHSAT105806
Alternative gene names: ENSG00000260841.1; CTC-205M6.5; OTTHUMG00000173461.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.4289 non-coding 
CPAT coding probability 22.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MGAT1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MGAT1-1:1
4.0 lnc-MGAT1-1:1
4.1 lnc-MGAT1-1:1
5.0 lnc-MGAT1-1:1
5.1 lnc-OR2Y1-3:1
5.2 lnc-MGAT1-1:1