Transcript: lnc-MGAT1-3:10

Basic information

LNCipedia transcript ID: lnc-MGAT1-3:10 
LNCipedia gene ID: lnc-MGAT1-3
Location (hg38): chr5:180793062-180809850
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 540 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT105808
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -97.5645 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MGAT1-3:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP62-3:10
4.0 lnc-MGAT1-3:10
4.1 lnc-MGAT1-3:10
5.0 lnc-MGAT1-3:10
5.1 lnc-OR2Y1-4:10
5.2 lnc-MGAT1-3:10