Transcript: lnc-MICAL2-2:1

Basic information

LNCipedia transcript ID: lnc-MICAL2-2:1 
LNCipedia gene ID: lnc-MICAL2-2
Ensembl Gene ID: ENSG00000254991
Ensembl Transcript ID: ENST00000476130
Location (hg38): chr11:12066929-12073014
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 899 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000476130; ENST00000476130.2; RP13-631K18.3-001; OTTHUMT00000385878.1; NONHSAT018036
Alternative gene names: ENSG00000254991; RP13-631K18.3; ENSG00000254991.1; OTTHUMG00000165711.1; AC124276.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1893 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MICAL2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MICAL2-2:1
3.1 lnc-MICAL2-2:1
4.0 lnc-MICAL2-2:1
4.1 lnc-MICAL2-2:1
5.0 lnc-MICAL2-2:1
5.1 lnc-AMPD3-22:1
5.2 lnc-MICAL2-2:1