Transcript: lnc-MICAL3-2:2

Basic information

LNCipedia transcript ID: lnc-MICAL3-2:2 
LNCipedia gene ID: lnc-MICAL3-2
Ensembl Gene ID: ENSG00000225335
Ensembl Transcript ID: ENST00000622035
Location (hg38): chr22:18078055-18078775
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 721 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622035.1
Alternative gene names: ENSG00000225335.3; XXbac-B476C20.9; AC016027.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -954.6247 non-coding 
CPAT coding probability 95.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MICAL3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MICAL3-2:2
4.1 lnc-MICAL3-2:2
5.0 lnc-MICAL3-2:2
5.1 lnc-RTN4R-53:2
5.2 lnc-MICAL3-2:2