Transcript: lnc-MID1-1:7

Basic information

LNCipedia transcript ID: lnc-MID1-1:7 
LNCipedia gene ID: lnc-MID1-1
Location (hg38): chrX:10963840-11111138
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 611 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433747; TCONS_00017038; ENST00000433747.1; RP11-120D5.1-001; OTTHUMT00000055745.1; NONHSAT136250
Alternative gene names: ENSG00000234129; XLOC_008111; linc-MID1; RP11-120D5.1; ENSG00000234129.1; OTTHUMG00000021129.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.7362 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MID1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGAP6-1:1
3.1 lnc-ARHGAP6-1:2
4.0 lnc-ARHGAP6-1:2
4.1 lnc-ARHGAP6-1:2
5.0 lnc-ARHGAP6-1:2
5.1 lnc-PCSK1N-219:6
5.2 lnc-MID1-1:7