Transcript: lnc-MIS12-1:2

Basic information

LNCipedia transcript ID: lnc-MIS12-1:2 
LNCipedia gene ID: lnc-MIS12-1
Ensembl Gene ID: ENSG00000262099
Ensembl Transcript ID: ENST00000571506
RefSeq ID: NR_135644
Location (hg38): chr17:5469092-5470360
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 398 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000571506.1; CTC-524C5.5-001; OTTHUMT00000439399.1; NR_135644.1
Alternative gene names: ENSG00000262099.1; CTC-524C5.5; OTTHUMG00000177876.1; AC004148.1; LOC105371506


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.3183 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MIS12-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MIS12-1:2
4.0 lnc-MIS12-1:2
4.1 lnc-MIS12-1:2
5.0 lnc-MIS12-1:2
5.1 lnc-ELP5-39:2
5.2 lnc-MIS12-1:2