Transcript: lnc-MIS18A-1:1

Basic information

LNCipedia transcript ID: lnc-MIS18A-1:1 
LNCipedia gene ID: lnc-MIS18A-1
Ensembl Gene ID: ENSG00000261610
Ensembl Transcript ID: ENST00000565959
Location (hg38): chr21:32259804-32261585
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1782 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565959.1; AP000265.1-001; OTTHUMT00000420359.1; NONHSAT081708
Alternative gene names: ENSG00000261610.1; AP000265.1; OTTHUMG00000172750.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.9009 non-coding 
CPAT coding probability 10.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MIS18A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MIS18A-1:1
4.0 lnc-MIS18A-1:1
4.1 lnc-MIS18A-1:1
5.0 lnc-MIS18A-1:1
5.1 lnc-TMEM50B-27:1
5.2 lnc-MIS18A-1:1