Transcript: lnc-MITF-2:1

Basic information

LNCipedia transcript ID: lnc-MITF-2:1 
LNCipedia gene ID: lnc-MITF-2
Ensembl Gene ID: ENSG00000241667
Ensembl Transcript ID: ENST00000460597
Location (hg38): chr3:69591341-69593121
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 749 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005538; ENST00000460597; ENST00000460597.1; RP11-444P10.1-001; OTTHUMT00000352923.1; NONHSAT090364
Alternative gene names: XLOC_002695; linc-MITF; ENSG00000241667; RP11-444P10.1; ENSG00000241667.1; OTTHUMG00000159018.1; AC104445.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.9877 non-coding 
CPAT coding probability 5.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MITF-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MITF-2:1
3.1 lnc-MITF-2:1
4.0 lnc-MITF-2:1
4.1 lnc-MITF-2:1
5.0 lnc-MITF-2:1
5.1 lnc-FAM19A1-7:1
5.2 lnc-MITF-2:1