Transcript: lnc-MKLN1-2:2

Basic information

LNCipedia transcript ID: lnc-MKLN1-2:2 
LNCipedia gene ID: lnc-MKLN1-2
Ensembl Gene ID: ENSG00000224865
Ensembl Transcript ID: ENST00000415393
RefSeq ID: NR_110836
Location (hg38): chr7:131910220-131948953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1229 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000415393; ENST00000415393.1; AC009518.5-001; OTTHUMT00000338730.1; NONHSAT123423; NR_110836; NR_110836.1
Alternative gene names: ENSG00000224865; AC009518.5; ENSG00000224865.2; OTTHUMG00000155199.1; ENSG00000224865.3; AC009518.4; ENSG00000224865.7; AC009518.1; LOC101928782


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.7531 non-coding 
CPAT coding probability 10.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MKLN1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKLN1-2:2
3.1 lnc-MKLN1-2:2
4.0 lnc-MKLN1-2:2
4.1 lnc-MKLN1-2:2
5.0 lnc-MKLN1-2:2
5.1 lnc-CPA1-17:7
5.2 lnc-MKLN1-2:2