Transcript: lnc-MLXIP-12:3

Basic information

LNCipedia transcript ID: lnc-MLXIP-12:3 
LNCipedia gene ID: lnc-MLXIP-12
Ensembl Gene ID: ENSG00000256546
Ensembl Transcript ID: ENST00000540968
Location (hg38): chr12:122063349-122064658
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540968; ENST00000540968.1; AC156455.1-002; OTTHUMT00000401715.1; NONHSAT031485
Alternative gene names: ENSG00000256546; AC156455.1; ENSG00000256546.1; OTTHUMG00000168952.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.6515 non-coding 
CPAT coding probability 3.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MLXIP-12:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCL7A-1:2
3.1 lnc-BCL7A-1:2
4.0 lnc-BCL7A-1:2
4.1 lnc-MLXIP-1:4
5.0 lnc-MLXIP-1:4
5.1 lnc-PSMD9-12:3
5.2 lnc-MLXIP-12:3