Transcript: lnc-MMD-2:1

Basic information

LNCipedia transcript ID: lnc-MMD-2:1 
LNCipedia gene ID: lnc-MMD-2
Ensembl Gene ID: ENSG00000262079
Ensembl Transcript ID: ENST00000576751
Location (hg38): chr17:55325757-55327791
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1763 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514286; TCONS_00025244; ENST00000576751.1; RP11-515O17.3-001; OTTHUMT00000439197.1; NONHSAT054810
Alternative gene names: ENSG00000251272; XLOC_012524; linc-COX11; ENSG00000262079.1; RP11-515O17.3; OTTHUMG00000177842.1; AC007638.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8888 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMD-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMD-2:1
3.1 lnc-MMD-2:1
4.0 lnc-MMD-2:1
4.1 lnc-MMD-2:1
5.0 lnc-MMD-2:1
5.1 lnc-PTRH2-70:1
5.2 lnc-MMD-2:1