Transcript: lnc-MMP17-3:2

Basic information

LNCipedia transcript ID: lnc-MMP17-3:2 
LNCipedia gene ID: lnc-MMP17-3
Location (hg38): chr12:131808963-131819566
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2187 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000010939.1|MICT00000089903.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 36.7817 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP17-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MMP17-3:2
5.0 lnc-MMP17-3:2
5.1 lnc-ULK1-5:3
5.2 lnc-MMP17-3:2