Transcript: lnc-MMP2-1:1

Basic information

LNCipedia transcript ID: lnc-MMP2-1:1 
LNCipedia gene ID: lnc-MMP2-1
Location (hg38): chr16:55389658-55427769
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 391 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024848; NONHSAT142630
Alternative gene names: XLOC_011731; linc-MMP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.9848 non-coding 
CPAT coding probability 3.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMP2-1:1
3.1 lnc-MMP2-1:1
4.0 lnc-MMP2-1:1
4.1 lnc-MMP2-1:1
5.0 lnc-MMP2-1:1
5.1 lnc-ADGRG1-69:1
5.2 lnc-MMP2-1:1