Transcript: lnc-MMP24OS-73:2

Basic information

LNCipedia transcript ID: lnc-MMP24OS-73:2 
LNCipedia gene ID: lnc-MMP24OS-73
RefSeq ID: NR_102706
Location (hg38): chr20:35276333-35278157
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1712 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT079487; NR_102706; NR_102706.1
Alternative gene names: ; MMP24-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 396.67 coding 
CPAT coding probability 10.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MMP24OS-73:2 no no no no

Available literature

  1. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF6-1:18
4.0 MMP24-AS1:2
4.1 MMP24-AS1:2
5.0 MMP24-AS1:2
5.1 lnc-MMP24OS-1:2
5.2 lnc-MMP24OS-73:2