Transcript: lnc-MMP24OS-73:6

Basic information

LNCipedia transcript ID: lnc-MMP24OS-73:6 
LNCipedia gene ID: lnc-MMP24OS-73
Location (hg38): chr20:35277342-35278129
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 712 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456790.1; MT1P3-002; OTTHUMT00000125665.1
Alternative gene names: ENSG00000126005.10; MT1P3; OTTHUMG00000032333.5; ENSG00000126005.11; MMP24-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 396.67 coding 
CPAT coding probability 11.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MMP24OS-73:6 no no no no

Available literature

  1. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF6-1:3
4.0 MMP24-AS1:6
4.1 MMP24-AS1:6
5.0 MMP24-AS1:6
5.1 lnc-MMP24OS-1:6
5.2 lnc-MMP24OS-73:6