Transcript: lnc-MMP24OS-7:2

Basic information

LNCipedia transcript ID: lnc-MMP24OS-7:2 
LNCipedia gene ID: lnc-MMP24OS-7
Ensembl Gene ID: ENSG00000278367
Ensembl Transcript ID: ENST00000615962
Location (hg38): chr20:35174355-35174919
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 565 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000615962.1
Alternative gene names: ENSG00000278367.1; RP11-42O4.2; AL356652.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -255.5923 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP24OS-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TRPC4AP-7:1
4.1 lnc-TRPC4AP-7:1
5.0 lnc-TRPC4AP-7:1
5.1 lnc-MMP24OS-7:1
5.2 lnc-MMP24OS-7:2