Transcript: lnc-MMRN1-12:25

Basic information

LNCipedia transcript ID: lnc-MMRN1-12:25 
LNCipedia gene ID: lnc-MMRN1-12
Location (hg38): chr4:89681512-89693936
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1816 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000513572.1; RP11-115D19.1-004; OTTHUMT00000364079.1; NONHSAT097402
Alternative gene names: ENSG00000251095.1; RP11-115D19.1; OTTHUMG00000161187.1; ENSG00000251095.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.28 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMRN1-12:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MMRN1-2:6
4.0 lnc-MMRN1-2:6
4.1 lnc-MMRN1-2:6
5.0 lnc-MMRN1-2:6
5.1 lnc-CCSER1-13:25
5.2 lnc-MMRN1-12:25