Transcript: lnc-MN1-4:1

Basic information

LNCipedia transcript ID: lnc-MN1-4:1 
LNCipedia gene ID: lnc-MN1-4
Ensembl Gene ID: ENSG00000227880
Ensembl Transcript ID: ENST00000440477
Location (hg38): chr22:27457247-27460060
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 770 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029462; ENST00000440477; ENST00000440477.1; RP11-46E17.6-001; OTTHUMT00000320634.1; NONHSAT084591
Alternative gene names: XLOC_014330; linc-CRYBB1-6; ENSG00000227880; RP11-46E17.6; ENSG00000227880.1; OTTHUMG00000150954.1; AL050402.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.3912 non-coding 
CPAT coding probability 15.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MN1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MN1-4:1
3.1 lnc-MN1-4:1
4.0 lnc-MN1-4:1
4.1 lnc-MN1-4:1
5.0 lnc-MN1-4:1
5.1 lnc-PITPNB-10:1
5.2 lnc-MN1-4:1