Transcript: lnc-MN1-5:1

Basic information

LNCipedia transcript ID: lnc-MN1-5:1 
LNCipedia gene ID: lnc-MN1-5
Ensembl Gene ID: ENSG00000223726
Ensembl Transcript ID: ENST00000454387
Location (hg38): chr22:27307483-27318538
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029461; ENST00000454387; ENST00000454387.1; CTA-929C8.7-001; OTTHUMT00000320637.1; NONHSAT084584
Alternative gene names: XLOC_014329; linc-CRYBB1-3; ENSG00000223726; CTA-929C8.7; ENSG00000223726.1; OTTHUMG00000150956.1; AL020994.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.7388 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MN1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MN1-5:1
3.1 lnc-MN1-5:1
4.0 lnc-MN1-5:1
4.1 lnc-MN1-5:1
5.0 lnc-MN1-5:1
5.1 lnc-PITPNB-13:1
5.2 lnc-MN1-5:1