Transcript: lnc-MNX1-1:1

Basic information

LNCipedia transcript ID: lnc-MNX1-1:1 
LNCipedia gene ID: lnc-MNX1-1
Ensembl Gene ID: ENSG00000236102
Ensembl Transcript ID: ENST00000426169
Location (hg38): chr7:157057709-157058514
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426169; ENST00000426169.2; RP4-639J15.1-001; OTTHUMT00000347852.2; NONHSAT124456
Alternative gene names: ENSG00000236102; RP4-639J15.1; ENSG00000236102.2; OTTHUMG00000157191.2; AC006967.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.0276 non-coding 
CPAT coding probability 13.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MNX1-1:1 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MNX1-1:1
3.1 lnc-MNX1-1:1
4.0 lnc-MNX1-1:1
4.1 lnc-MNX1-1:1
5.0 lnc-MNX1-1:1
5.1 lnc-MNX1-1:1
5.2 lnc-MNX1-1:1