Transcript: lnc-MPDZ-2:1

Basic information

LNCipedia transcript ID: lnc-MPDZ-2:1 
LNCipedia gene ID: lnc-MPDZ-2
Ensembl Gene ID: ENSG00000224935
Ensembl Transcript ID: ENST00000452685
Location (hg38): chr9:12098660-12159147
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015794; ENST00000452685; ENST00000452685.1; RP11-74C3.1-001; OTTHUMT00000051728.1; NONHSAT130220
Alternative gene names: XLOC_007648; linc-PTPRD-6; ENSG00000224935; RP11-74C3.1; ENSG00000224935.1; OTTHUMG00000019555.1; AL589678.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.4232 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPDZ-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPDZ-1:1
3.1 lnc-MPDZ-2:1
4.0 lnc-MPDZ-2:1
4.1 lnc-MPDZ-2:1
5.0 lnc-MPDZ-2:1
5.1 lnc-CER1-14:1
5.2 lnc-MPDZ-2:1