Transcript: lnc-MPEG1-1:1

Basic information

LNCipedia transcript ID: lnc-MPEG1-1:1 
LNCipedia gene ID: lnc-MPEG1-1
Ensembl Gene ID: ENSG00000214797
Ensembl Transcript ID: ENST00000399003
Location (hg38): chr11:59268876-59284033
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2805 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000399003; ENST00000399003.1; RP11-1036E20.9-001; OTTHUMT00000394611.1; NONHSAT021520
Alternative gene names: ENSG00000214797; RP11-1036E20.9; ENSG00000214797.3; OTTHUMG00000167437.1; AP002358.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1703 non-coding 
CPAT coding probability 11.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPEG1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPEG1-1:1
3.1 lnc-MPEG1-1:1
4.0 lnc-MPEG1-1:1
4.1 lnc-MPEG1-1:1
5.0 lnc-MPEG1-1:1
5.1 lnc-OR5M11-36:1
5.2 lnc-MPEG1-1:1