Transcript: lnc-MPHOSPH8-165:1

Basic information

LNCipedia transcript ID: lnc-MPHOSPH8-165:1 
LNCipedia gene ID: lnc-MPHOSPH8-165
Ensembl Gene ID: ENSG00000279516
Ensembl Transcript ID: ENST00000623511
Location (hg38): chr13:18195297-18232024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1970 bp
Exons: 8
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623511.1
Alternative gene names: ENSG00000279516.1; FAM230C


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.1423 non-coding 
CPAT coding probability 34.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPHOSPH8-165:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-GTF3A-165:1
5.1 lnc-GTF3A-165:1
5.2 lnc-MPHOSPH8-165:1