Transcript: lnc-MPPE1-12:2

Basic information

LNCipedia transcript ID: lnc-MPPE1-12:2 
LNCipedia gene ID: lnc-MPPE1-12
Ensembl Gene ID: ENSG00000260759
Ensembl Transcript ID: ENST00000561598
Location (hg38): chr18:11666456-11670165
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3710 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561598.1; RP11-677O4.2-001; OTTHUMT00000431547.1; NONHSAT058100
Alternative gene names: ENSG00000260759.1; RP11-677O4.2; OTTHUMG00000176127.1; AP001120.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7461 non-coding 
CPAT coding probability 20.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPPE1-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-677O4.1.1-1:1
4.0 lnc-RP11-677O4.1.1-1:1
4.1 lnc-RP11-677O4.1.1-1:1
5.0 lnc-RP11-677O4.1.1-1:1
5.1 lnc-SMAD2-278:2
5.2 lnc-MPPE1-12:2