Transcript: lnc-MRE11-1:9

Basic information

LNCipedia transcript ID: lnc-MRE11-1:9 
LNCipedia gene ID: lnc-MRE11-1
Ensembl Gene ID: ENSG00000255929
Ensembl Transcript ID: ENST00000536540
Location (hg38): chr11:94545330-94740269
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 954 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536540.1; RP11-867G2.8-001; OTTHUMT00000396436.1; NONHSAT023725; ENST00000536540.5
Alternative gene names: ENSG00000255929.1; RP11-867G2.8; OTTHUMG00000167821.1; ENSG00000255929.5; AP000943.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 83.0475 coding 
CPAT coding probability 4.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MRE11-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRE11A-1:2
4.0 lnc-MRE11A-1:2
4.1 lnc-MRE11A-1:2
5.0 lnc-MRE11A-1:2
5.1 lnc-NOX4-52:9
5.2 lnc-MRE11-1:9