Transcript: lnc-MRGPRD-1:1

Basic information

LNCipedia transcript ID: lnc-MRGPRD-1:1 
LNCipedia gene ID: lnc-MRGPRD-1
Ensembl Gene ID: ENSG00000255741
Ensembl Transcript ID: ENST00000542410
Location (hg38): chr11:68941503-68942852
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 569 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542410.1; RP11-757G1.5-001; OTTHUMT00000396873.1; NONHSAT022554
Alternative gene names: ENSG00000255741.1; RP11-757G1.5; OTTHUMG00000167895.1; AP000808.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -248.3813 non-coding 
CPAT coding probability 4.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRGPRD-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRGPRD-1:1
4.0 lnc-MRGPRD-1:1
4.1 lnc-MRGPRD-1:1
5.0 lnc-MRGPRD-1:1
5.1 lnc-KMT5B-12:1
5.2 lnc-MRGPRD-1:1