Transcript: lnc-MRPL39-10:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-10:1 
LNCipedia gene ID: lnc-MRPL39-10
Ensembl Gene ID: ENSG00000224018
Ensembl Transcript ID: ENST00000448063
Location (hg38): chr21:24155170-24188342
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 693 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028890; ENST00000448063; ENST00000448063.1; AP000470.2-001; OTTHUMT00000171147.1; NONHSAT081443
Alternative gene names: XLOC_014029; linc-TMPRSS15-24; ENSG00000224018; AP000470.2; ENSG00000224018.1; OTTHUMG00000078333.1; AP000470.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.2804 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-9:1
3.1 lnc-MRPL39-10:1
4.0 lnc-MRPL39-10:1
4.1 lnc-MRPL39-10:1
5.0 lnc-MRPL39-10:1
5.1 lnc-N6AMT1-40:1
5.2 lnc-MRPL39-10:1