Transcript: lnc-MRPL39-12:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-12:1 
LNCipedia gene ID: lnc-MRPL39-12
Ensembl Gene ID: ENSG00000231986
Ensembl Transcript ID: ENST00000441465
Location (hg38): chr21:23888798-23890541
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 680 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028888; ENST00000441465; ENST00000441465.1; AP000474.1-001; OTTHUMT00000171079.1; NONHSAT081435
Alternative gene names: XLOC_014027; linc-TMPRSS15-22; ENSG00000231986; AP000474.1; ENSG00000231986.1; OTTHUMG00000078274.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.4928 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-11:1
3.1 lnc-MRPL39-12:1
4.0 lnc-MRPL39-12:1
4.1 lnc-MRPL39-12:1
5.0 lnc-MRPL39-12:1
5.1 lnc-N6AMT1-42:1
5.2 lnc-MRPL39-12:1