Transcript: lnc-MRPL39-13:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-13:1 
LNCipedia gene ID: lnc-MRPL39-13
Ensembl Gene ID: ENSG00000228592
Ensembl Transcript ID: ENST00000262354
Location (hg38): chr21:23361104-23384861
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1725 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028887; ENST00000262354; ENST00000262354.4; AP000459.4-001; OTTHUMT00000171048.1; NONHSAT081422
Alternative gene names: XLOC_014026; linc-TMPRSS15-23; ENSG00000228592; AP000459.4; ENSG00000228592.1; OTTHUMG00000078246.1; D21S2088E; AP000459.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.6704 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-12:1
3.1 lnc-MRPL39-13:1
4.0 lnc-MRPL39-13:1
4.1 lnc-MRPL39-13:1
5.0 lnc-MRPL39-13:1
5.1 lnc-N6AMT1-45:3
5.2 lnc-MRPL39-13:1