Transcript: lnc-MRPL39-2:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-2:1 
LNCipedia gene ID: lnc-MRPL39-2
Location (hg38): chr21:25559404-25564645
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2423 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501838; TCONS_00028904; NONHSAT081497
Alternative gene names: ENSG00000246147; XLOC_014038; linc-TMPRSS15-16; AL109616.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9267 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-2:1 no no no no

Available literature

  1. Iosue (2013), Argonaute 2 sustains the gene expression program driving human monocytic differentiation of acute myeloid leukemia cells., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-1:1
3.1 lnc-MRPL39-2:1
4.0 lnc-MRPL39-2:1
4.1 lnc-MRPL39-2:1
5.0 lnc-MRPL39-2:1
5.1 lnc-N6AMT1-23:3
5.2 lnc-MRPL39-2:1