Transcript: lnc-MRPL39-6:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-6:1 
LNCipedia gene ID: lnc-MRPL39-6
Ensembl Gene ID: ENSG00000222042
Ensembl Transcript ID: ENST00000409758
Location (hg38): chr21:25169431-25333825
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 763 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000409758; ENST00000409758.1; AP000233.4-001; OTTHUMT00000171136.3; NONHSAT081466
Alternative gene names: ENSG00000222042; AP000233.4; ENSG00000222042.1; OTTHUMG00000078325.3; AP001341.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.0996 non-coding 
CPAT coding probability 10.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-5:1
3.1 lnc-MRPL39-6:1
4.0 lnc-MRPL39-6:1
4.1 lnc-MRPL39-6:1
5.0 lnc-MRPL39-6:1
5.1 lnc-N6AMT1-34:1
5.2 lnc-MRPL39-6:1